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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921888.1_cds_XP_016470782.1_63191
CDS Infomation

[gene=LOC107793024] [db_xref=GeneID:107793024] [protein=protein TPR2-like isoform X4] [protein_id=XP_016470782.1] [location=join(49384..49463,49846..50025,50149..50262,50341..50499,51466..51643,51766..51892,51989..52098,52218..52356,52572..52681,53049..53118,53221..53294,53388..53483,53616..53711,53877..54004,54894..55128,55217..55381,55505..55612,55742..55888,56414..56524,56624..56806,56981..57109,58182..58277,58511..58696,59340..59512,61430..61646)] [gbkey=CDS]
Sequence

ATGTCTTCCTTAAGTAGGGAACTGGTTTTTTTGATCCTCCAGTTTTTGGATGAGGAAAAG
TTCAAAGAGGCAGTTCATAAGTTGGAGCAAGAATCTGGTTTCTTCTTCAATATGAAATAC
TTTGAGGATCAAGTGCAAGCTGGTGAATGGGATGAAGTTGAGCGATACCTAAGTGGGTTC
ACAAAGGTTGAGGACAACCGCTATTCAATGAAGATCTTCTTTGAAATACGAAAGCAAAAG
TATCTTGAAGCTCTTGACAAGAATGATCGAGTAAAAGCAGTTGAGATTCTTGTGAAGGAC
CTTAAGGTTTTTGCTTCTTTTAATGAAGATCTTTTCAAAGAGATCACCCAGTTACTGACT
CTCGACAATTTTAGGCAGAACGAGCAGCTTTCCAAATATGGTGATACAAAGTCGGCAAGA
AATATTATGCTGGTAGAACTAAAAAAGCTTATAGAGGCAAATCCTTTGTTCCGTGACAAG
TTAACTTTTCCTTCTTTCAAAGCTTCACGACTGCGGACATTGATTAATCAGAGTCTTAAC
TGGCAGCATCAGCTATGCAAGAATCCACGTCCAAACCCTGATATTAAAACACTATTTACT
GATCATACTTGTGCTTCTAGCAATGGAACTCGGCCTCCCCCCCCTGTAAATGCACCGCTT
GGTGGACCAGTTCCAAAACCTGGGGCATTTCCTCCTCTTGGAGTTCACAGTCCATTCCAA
CCAGTTGTTTCTCCTTCACCAAGTGCCATTGCAGGGTGGATGTCAAGTGCCAATCCTAAT
ATACCTCATCCTGCTGTTGCTCCAGGTCCCCCTGGACTTGTGCAGGCTCCTGGCGCTGCT
GCCTTTCTAAAACATCCAAGAACTACGCCAGGGGGTCCTGGAATGGACTATCAAATGGCC
GATTCAGAGCATTTGATGAAACGAATGCGTGCTGGTCAATCTGATGAGGTATCCTTTTCT
GGTTCAACTCATCCTCCCCATATGTATTCACCGGATGACCTTCCCAAAACTGTTGTGCGG
AATCTTAGCCAAGGATCCAATGTTATGAGCATGGATTTCCATCCACAACAACAGACGGTT
CTTCTAGTCGGAACCAATGTTGGTGACATTAGCATTTGGGAAGTTGGATCTCGAGAACGG
TTAGTGCATAAGACCTTCAAGGTTTGGGATATATCTGCATGCTCAATGCCATTCCAGACA
GCTTTAGTCAAAGATACCACTATATCAGTCAATCGATGTGTATGGGGCCCAGATGGTTCT
ATACTTGGAGTTGCTTTTTCCAAGCACATTATTCAAATATATACATACAGCCCAGCAGGA
GAATTGAGACAGCATCTAGAAATTGATGCTCATGCTGGTGGCGTTAATGATATTGCTTTT
GCCCATCCTAATAAGCAACTCTGCATAGTAACGTGCGGGGATGACAAAACAATCAAGGTC
TGGGATGCAGTAGGTGGTCGTAGACAATATATGTTTGAGGGGCATGAAGCTCCTGTATAT
TCTGTCTGCCCTCACTATAAAGAGAATATCCAGTTTATTTTCTCTACGGCCATTGATGGT
AAAATAAAAGCCTGGCTGTACGATTGCATGGGATCAAGAGTAGATTATGATGCCCCCGGT
CTTTGGTGCACAACAATGGCATATAGTGCTGATGGAACGAGACTTTTCTCGTGTGGCACA
AGTAAAGAAGGTGAATCCCACCTTGTAGAGTGGAATGAGAGTGAAGGAGCAATCAAGAGG
ACATACGCTGGCTTTAGAAAGCGTTCATTAGGTGTTGTGCAGTTTGACACAACAAAGAAT
CGTTTCTTAGCTGCTGGTGATGAGTTCCAGATAAAGTTTTGGGATATGGATAATAACAAC
ATGCTTACATCTACTGATGGCGATGGTGGATTGCCTGCCAGTCCTAGACTAAGATTCAAT
AAGGAAGGCTCGTTGCTGGCTCTCACGACGAGTGATAATGGAATCAAGGTTCTGGCAAAC
ACTGATGGACAGCAAATGCTGAGGATGCTGGAGAGCAGGGCATTTGAGGGTTCTCGTGCG
CTTTCTGAAGTCAATGTTAAGCCTCCAATTGCTGGTTCCTTAGGTCCAATTCCTAATATT
TCTGGCTCTGCACCTCCAATCATAGAACGTAGTGATAGAACTCAGCAATCAATGTCCATC
GGCAATCTGGCCACTATGGAAAGCAGCAGAGTTCCTGACGTGAAACCTAGAATTGCAGAA
AGTATGGACAAGATTAAAAGCTGGAAGGTCTCTGACATTGCTGACTCATCTCAGCTTAAA
ACGCTAAAGTTGCCAGACTCTCTGTCAGCCAGCAAGGTGCTGCGGCTACTCTATACAAAT
TCTGGGCTTGCTGTGCTGGCACTGGGCTCCAATGCCATTCATAAGCTCTGGAAATGGCAG
AGAAATGAGCGAAATCCATCTGGAAAGTCCTCTGCGTCAATTGCCCCACAACTATGGCAG
CCGACAAATGGAGCACTCATGTCTAACGATGTCGGTGACGCAAAATCAGCTGAAGATGCA
GCTGCATGTATTGCTTTATCTAAAAATGATTCTTATGTCATGTCTGCTTCTGGTGGGAAG
GTCTCCTTGTTTAACATGATGACTTTTAAGGTGATGACAACTTTCATGCCGCCACCTCCT
GCAGCCACCTATTTGGCATTTCATCCTCAAGATAACAATGTTATCGCTGTAGGAATGGAG
GACTCCACTATCCAGATATACAATGTTAGGGTTGATGAGGTCAAAACCAAGCTCAAGGGT
CACCAGAAACGGATCACAGGCCTTGCATTTTCACAGAGTTTGAATGTACTGGTATCTTCA
GGTGCAGATGCACAGCTATGTATCTGGAGTGTTGATGGCTGGGAAAAGAAAAAAGCAAGG
CCTATCCAAGTGCCGCCAGGTCACCAAGGTCCCTTAGTTGGAGAAACTAGAGTCCAATTC
CATAATGACCAATCTCATATACTAGTAGTTCATGAAAGCCAAATTGGAATCTATGATACC
CAACTTGAATGTCTGCGTGCTTGGCATCCAAGAGATTCACTCAGTGCTCCTATTTCAAGT
GCTATATACTCATGTGATGGCCTGCTGGTCTTTACTGGATTCTGCGATGGTGCAATTGGA
ATATATGATGCAGACAGTCTCAGACTTCGATGTAGAATTGCACCCTCAGCTTACATATCT
TCTTCAGTTAGCAGCGGCGGTGGCACTGCATTTCCTGTGGTGATAGCAGCACATCCATCT
GATTCCAACCAATTTGCTCTTGGTATGAGTGATGGCACAGTGCATGTGATTGAGCCATCA
GATGCAGAGCCCAAATGGGGCAGTTCACCTCCTCAAGATAATGGATCTATGCCTTCTATT
CCCTCAAGTTCTGCATTGAATTGTCAGCCATCAGAAACCCCTTCAAGGTGA

Peptide Sequence

PEP ID

XP_016470782.1
PEP Infomation

PREDICTED: protein TPR2-like isoform X4 [Nicotiana tabacum]
Sequence

MSSLSRELVFLILQFLDEEKFKEAVHKLEQESGFFFNMKYFEDQVQAGEWDEVERYLSGF
TKVEDNRYSMKIFFEIRKQKYLEALDKNDRVKAVEILVKDLKVFASFNEDLFKEITQLLT
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPSFKASRLRTLINQSLN
WQHQLCKNPRPNPDIKTLFTDHTCASSNGTRPPPPVNAPLGGPVPKPGAFPPLGVHSPFQ
PVVSPSPSAIAGWMSSANPNIPHPAVAPGPPGLVQAPGAAAFLKHPRTTPGGPGMDYQMA
DSEHLMKRMRAGQSDEVSFSGSTHPPHMYSPDDLPKTVVRNLSQGSNVMSMDFHPQQQTV
LLVGTNVGDISIWEVGSRERLVHKTFKVWDISACSMPFQTALVKDTTISVNRCVWGPDGS
ILGVAFSKHIIQIYTYSPAGELRQHLEIDAHAGGVNDIAFAHPNKQLCIVTCGDDKTIKV
WDAVGGRRQYMFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCMGSRVDYDAPG
LWCTTMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYAGFRKRSLGVVQFDTTKN
RFLAAGDEFQIKFWDMDNNNMLTSTDGDGGLPASPRLRFNKEGSLLALTTSDNGIKVLAN
TDGQQMLRMLESRAFEGSRALSEVNVKPPIAGSLGPIPNISGSAPPIIERSDRTQQSMSI
GNLATMESSRVPDVKPRIAESMDKIKSWKVSDIADSSQLKTLKLPDSLSASKVLRLLYTN
SGLAVLALGSNAIHKLWKWQRNERNPSGKSSASIAPQLWQPTNGALMSNDVGDAKSAEDA
AACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPAATYLAFHPQDNNVIAVGME
DSTIQIYNVRVDEVKTKLKGHQKRITGLAFSQSLNVLVSSGADAQLCIWSVDGWEKKKAR
PIQVPPGHQGPLVGETRVQFHNDQSHILVVHESQIGIYDTQLECLRAWHPRDSLSAPISS
AIYSCDGLLVFTGFCDGAIGIYDADSLRLRCRIAPSAYISSSVSSGGGTAFPVVIAAHPS
DSNQFALGMSDGTVHVIEPSDAEPKWGSSPPQDNGSMPSIPSSSALNCQPSETPSR

Transcript Sequence

Gene sequence data has not been registered.